Selected publications

Carbon and nitrogen nutrient signal transduction

• Deubiquitinating enzymes UBP12 and UBP13 stabilize the brassinosteroid receptor BRI1
  Yongming Luo，Junpei Takagi, Lucas Alves Neubus Claus, Chao Zhang, Shigetaka Yasuda, Yoko Hasegawa, Junji Yamaguchi, Libo Shan, Eugenia Russinova, Takeo Sato
  EMBO reports, e53354, 2022 (doi: 10.15252/embr.202153354) Press release
• The TGN/EE SNARE protein SYP61 and the ubiquitin ligase ATL31 cooperatively regulate plant responses to carbon/nitrogen conditions in Arabidopsis
  Hasegawa Y, Huarancca Reyes T, Uemura T, Baral A, Fujimaki A, Luo Y, Morita Y, Saeki Y, Maekawa S, Yasudaa S, Mukuta K, Fukao Y, Tanaka K, Nakano A, Takagi J, Bhalerao RP, Yamaguchi J and Sato T*
  Plant Cell, 34:1354-1374. 2022
• Low nitrogen conditions accelerate flowering by modulating the phosphorylation state of FLOWERING BHLH 4 in Arabidopsis
  Sanagi M, Aoyama S, Kubo A, Lu Y, Sato Y, Ito S, Abe M, Mitsuda N, Ohme-Takagi M, Kiba T, Nakagami H, Rolland F, Yamaguchi J, Imaizumi T* and Sato T* *Corresponding authors
  Proc. Natl. Acad. Sci. U. S. A., 118: e2022942118. 2021　Press release
• Protein phosphorylation dynamics under carbon/nitrogen-nutrient stress and identification of a cell death-related receptor-like kinase in Arabidopsis
  Li X, Sanagi M, Lu Y, Nomura Y, Stolze SC, Yasuda S, Saijo Y, Schulze WX, Regina F, Stitt M, Lunn JE, Nakagami H*, Sato T*, Yamaguchi J *Corresponding authors
  Frontiers in Plant Science 11: 377. 2020
• Arabidopsis CBL-Interacting Protein Kinases Regulate Carbon/Nitrogen-Nutrient Response by Phosphorylating Ubiquitin Ligase ATL31.
  Yasuda S, Aoyama S, Hasegawa Y, Sato T* and Yamaguchi J
  Mol. Plant 10: 605-618, 2017

• Ubiquitin ligase ATL31 functions in leaf senescence in response to the balance between atmospheric CO2 and nitrogen availability in Arabidopsis.
  Aoyama S, Huarancca Reyes T, Guglielminetti L, Yu L, Morita Y, Sato T*, Yamaguchi J
  Plant Cell Physiol. 55: 293-305, 2014
• Phosphorylation of Arabidopsis ubiquitin ligase ATL31 is critical for plant C/N-nutrient response under control of 14-3-3 stability.
  Yasuda S, Sato T, Maekawa S, Aoyama S, Fukao Y, Yamaguchi J* (2013)
  J. Biol. Chem. 289: 15179-15193, 2014

• Identification of 14-3-3 proteins as a target of ATL31 ubiquitin ligase, a regulator of the C/N response in Arabidopsis thaliana.
  Sato T, Maekawa S, Yasuda S, Domeki Y, Sueyoshi K, Fujiwara M, Fukao Y, Goto DB, Yamaguchi J*
  Plant J. 68: 137-146, 2011

Plant defense response to pathogen attack

• The C/N regulator ATL31 controls papilla formation in response to powdery mildew fungi penetration by interacting with SNARE SYP121 in Arabidopsis.
  Maekawa S, Inada N, Yasuda S, Fukao Y, Fujiwara M, Sato T, Yamaguchi J*
  Plant Physiol. 164: 879-887, 2014

Plant Proteome  Study -Interactome and Ubiquin-Proteasome system-

• Deubiquitinating enzymes UBP12 and UBP13 stabilize the brassinosteroid receptor BRI1
  Yongming Luo，Junpei Takagi, Lucas Alves Neubus Claus, Chao Zhang, Shigetaka Yasuda, Yoko Hasegawa, Junji Yamaguchi, Libo Shan, Eugenia Russinova, Takeo Sato
  EMBO reports, e53354, 2022 (doi: 10.15252/embr.202153354) Press release
• Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.).
  Lu Y^a, Yasuda S^a, Li X, Fukao Y, Tohge T, Fernie AR, Matsukura C, Ezura H, Sato T* and Yamaguchi J  (^aThese authors contributed equally to this work)
  Journal of Proteomics 143: 254-264. (doi: 10.1016/j.jprot.2016.04.016.)
• Proteomics analysis reveals a highly heterogenous proteasome composition and the post-translational regulation of peptidase activity under pathogen signaling in plants.
  Sun HH, Fukao Y, Ishida S, Yamamoto H, Maekawa S, Fujiwara M, Sato T*, Yamaguchi J
  J. Proteome Res. 12: 5084-5095, 2013

2021

• Low nitrogen conditions accelerate flowering by modulating the phosphorylation state of FLOWERING BHLH 4 in Arabidopsis
  Sanagi M, Aoyama S, Kubo A, Lu Y, Sato Y, Ito S, Abe M, Mitsuda N, Ohme-Takagi M, Kiba T, Nakagami H, Rolland F, Yamaguchi J, Imaizumi T* and Sato T* *Corresponding authors
  Proc. Natl. Acad. Sci. U. S. A., 118: e2022942118. 2021　Press release

2020

• Protein phosphorylation dynamics under carbon/nitrogen-nutrient stress and identification of a cell death-related receptor-like kinase in Arabidopsis
  Li X, Sanagi M, Lu Y, Nomura Y, Stolze SC, Yasuda S, Saijo Y, Schulze WX, Regina F, Stitt M, Lunn JE, Nakagami H*, Sato T*, Yamaguchi J
  Frontiers in Plant Science 11: 377. 2020
• Proteomic analysis of 14-3-3 targets in tomato fruit tissues.
  Luo Y, Lu Y, Yamaguchi J and Sato T*
  Method. Mol. Biol. “Plant Proteomics Methods and Protocols” 3rd edition, 2139: 289-296. 2020

2019

• Involvement of the membrane-localized ubiquitin ligase ATL8 in sugar starvation response in Arabidopsis
  Luo Y, Aoyama S, Fukao Y, Chiba Y, Sato T and Yamaguchi J*
  Plant Biotechnol. 37: 107-112, 2019
• Identification of Arabidopsis CCR4-NOT complexes with Pumilio RNA binding proteins, APUM5 and APUM2
  Arae T, Morita K, Imahori R, Suzuki Y, Yasuda S, Sato T, Yamaguchi J and Chiba Y*
  Plant Cell Physiol., 60: 2015-2025. 2019

2018

• Methods for Elucidation of Plant Senescence in Response to C/N-Nutrient Balance
  Aoyama S, Yamaguchi J and Sato T*
  Method. Mol. Biol. “Plant Senescence” 151-159, 2018
• Sugar-responsive transcription factor bZIP3 affects leaf shape in Arabidopsis plants
  Sanagi M, Lu Y, Aoyama S, Morita Y, Mitsuda N, Ikeda M, Ohme-Takagi M, Sato T and Yamaguchi J*
  Plant Biotechnol. in press, 2018　日本語解説PDF

2017

• Arabidopsis CBL-Interacting Protein Kinases Regulate Carbon/Nitrogen-Nutrient Response by Phosphorylating Ubiquitin Ligase ATL31.
  Yasuda S, Aoyama S, Hasegawa Y, Sato T* and Yamaguchi J
  Mol. Plant 10: 605-618, 2017
  
• Direct Transcriptional Activation of BT Genes by NLP Transcription Factors Is a Key Component of the Nitrate Response in Arabidopsis.
  Sato T, Maekawa S, Konishi M, Yoshioka M, Sasaki Y, Maeda H, Ishida T, Kato Y, Yamaguchi J and Yanagisawa S*
  Biochem. Biophys. Res. Commun. 2017 483:380-386.
• Ubiquitin related enzymes and plant-specific ubiquitin ligase ATL family in tomato plants.
  Li X, Hasegawa Y, Lu Y and Sato T*
  Plant Biotechnol. 34: 71-78.
  
• Membrane-localized ubiquitin ligase ATL15 functions in sugar-responsive growth regulation in Arabidopsis
  Aoyama S, Terada S, Sanagi M, Hasegawa Y, Lu Y, Morita Y, Chiba Y, Sato T and Yamaguchi J^*
  Biochem. Biophys. Res. Commun. 2017, in press
  

2016

• Characterization of ubiquitin ligase SlATL31 and proteomic analysis of 14-3-3 targets in tomato fruit tissue (Solanum lycopersicum L.).
  Lu Y^a, Yasuda S^a, Li X, Fukao Y, Tohge T, Fernie AR, Matsukura C, Ezura H, Sato T* and Yamaguchi J  (^aThese authors contributed equally to this work)
  Journal of Proteomics 143: 254-264. (doi: 10.1016/j.jprot.2016.04.016.)
  日本語解説PDF
• Integration of C/N-nutrient and multiple environmental signals into the ABA signaling cascade.
  Lu Y, Yamaguchi J, Sato T*
  Plant Signaling & Behavior e1048940, 2016

2015

• ABI1 regulates carbon/nitrogen-nutrient signal transduction independent of ABA biosynthesis and canonical ABA signaling pathways in Arabidopsis.
  Lu Y, Sasaki Y, Li X, Mori C. Izumi, Matsuura T, Hirayama T, Sato T, Yamaguchi J
  J. Exp. Bot. (in press)

• Pale-green phenotype of atl31 atl6 double mutant leaves is caused by disruption of 5-aminolevulinic acid biosynthesis in Arabidopsis thaliana.
  Maekawa S, Takabayashi A, Huarancca Reyes T, Yamamoto H, Tanaka A, Sato T, Yamaguchi J
  PLoS ONE 23;10(2): e0117662, 2015

• The Arabidopsis ubiquitin ligase ATL31 is transcriptionally controlled by WRKY33 transcription factor in response to pathogen attack.
  Huarancca Reyes T, Maekawa S, Sato T, Yamaguchi J
  Plant Biotechnol. (in press)

2014

• Ubiquitin ligase ATL31 functions in leaf senescence in response to the balance between atmospheric CO2 and nitrogen availability in Arabidopsis.
  (Pubmed: http://www.ncbi.nlm.nih.gov/pubmed/24399238)
  Aoyama S, Huarancca Reyes T, Guglielminetti L, Yu L, Morita Y, Sato T, Yamaguchi J
  Plant Cell Physiol. 55: 293-305, 2014

• Regulation of senescence under elevated atmospheric CO2 via ubiquitin modification.
  Aoyama S, Lu Y, Sato T, Yamaguchi J
  Plant Signaling & Behavior e28839, 2014

• The C/N regulator ATL31 controls papilla formation in response to powdery mildew fungi penetration by interacting with SNARE SYP121 in Arabidopsis.
  （Pubmed: http://www.ncbi.nlm.nih.gov/pubmed/24394775）
  Maekawa S, Inada N, Yasuda S, Fukao Y, Fujiwara M, Sato T, Yamaguchi J
  Plant Physiol. 164: 879-887, 2014

• Phosphorylation of Arabidopsis ubiquitin ligase ATL31 is critical for plant C/N-nutrient response under control of 14-3-3 stability.
  (Pubmed: http://www.ncbi.nlm.nih.gov/pubmed/24722992)
  Yasuda S, Sato T, Maekawa S, Aoyama S, Fukao Y, Yamaguchi J (2013)
  J. Biol. Chem. 289: 15179-15193, 2014

2013

• Proteomics analysis reveals a highly heterogenous proteasome composition and the post-translational regulation of peptidase activity under pathogen signaling in plants.
  （Pubmed: http://www.ncbi.nlm.nih.gov/pubmed/23991809）
  Sun HH, Fukao Y, Ishida S, Yamamoto H, Maekawa S, Fujiwara M, Sato T, Yamaguchi J
  J. Proteome Res. 12: 5084-5095, 2013

• Assay for proteasome-dependent protein degradation and ubiquitinated proteins.
  Sato, T., Sako, K. and Yamaguchi J.
  Methods. Mol. Biol. “Plant Proteomics: Methods and Protocols, 2nd edition”, 655-663, 2013

• Changes in mRNA stability associated with cold stress in Arabidopsis cells.
  Chiba Y, Mineta K, Hirai MY, Suzuki S, Kanaya S, Takahashi H, Onouchi H, Yamaguchi J, Naito S
  Plant Cell Physiol. 54: 180-194, 2013

• Arabidopsis transcriptional repressor ERF9 participates in resistance against necrotrophic fungi.
  Maruyama Y, Yamoto N, Suzuki Y, Chiba Y, Yamazaki K, Sato T, Yamaguchi J
  Plant Sci. 213: 79-87, 2013

2012

• Arabidopsis RPT2a, 19S proteasome subunit, regulates gene silencing via DNA methylation.
  Sako K, Maki Y, Kanai T, Kato E, Maekawa S, Yasuda S, Sato T, Watahiki MK, Yamaguchi J
  PLoS ONE 7(5): e37086, 2012

• The Arabidopsis ubiquitin ligases ATL31 and ATL6 control the defense response as well as the carbon/nitrogen response.
  Maekawa S, Sato T, Asada Y, Yasuda S, Yoshida M, Chiba Y, Yamaguchi J
  Plant Mol. Biol. 79: 217-227, 2012

• Sugar-inducible RPT2a, a subunit of 26S proteasome, participates in sugar response in Arabidopsis.
  Sun H, Sako K, Suzuki Y, Maekawa S, Yasuda S, Chiba Y, Sato T and Yamaguchi J
  Plant Biotechnol. 29: 279-284, 2012

• Proteomics approach to study metabolic regulation mediated by ubiquitin-proteasome system in Arabidopsis.
  Yasuda S, Maekawa S, Sato T, Yamaguchi J
  Frontiers in Agriculture Proteome Research, 39-44, 2012

2011

• Identification of 14-3-3 proteins as a target of ATL31 ubiquitin ligase, a regulator of the C/N response in Arabidopsis thaliana.
  Sato T, Maekawa S, Yasuda S, Domeki Y, Sueyoshi K, Fujiwara M, Fukao Y, Goto DB, Yamaguchi J
  Plant J. 68: 137-146, 2011

• Carbon and nitrogen metabolism regulated by ubiquitin-proteasome system.
  Sato T, Maekawa S, Yasuda S, Yamaguchi J
  Plant Signaling & Behavior 6: 1465-1468, 2011

• The Arabidopsis NSL2 negatively controls systemic acquired resistance via hypersensitive response.
  Asada Y, Yamamoto M, Tsutsui T, Yamaguchi J
  Plant Biotechnol. 28: 9-15, 2011

• Arabidopsis thaliana 26S Proteasome Subunits RPT2a and RPT5a Are Crucial for Zinc Deficiency-Tolerance.
  Sakamoto T, Kamiya T, Sako K, Yamaguchi J, Yamagami M, Fujiwara T
  Biosci. Biotech. Biochem. 75: 561-567, 2011

• Sucrose transporter NtSUT4 from tobacco BY-2 involved in plant cell shape during miniprotoplast culture.
  Okubo-Kurihara E, Higaki T, Kurihara Y, Kutsuna N, Yamaguchi J, Hasezawa S
  J. Plant Res. 123: 395-403, 2011

2010

• Control of endoreduplication of trichome by RPT2a, a subunit of 19S proteasome in Arabidopsis.
  Sako K, Maki Y, Imai KK, Aoyama T, Goto DB, Yamaguchi J
  J Plant Res. 123: 701-706, 2010

• How does the plant proteasome control leaf size?
  Sako K, Yamaguchi J
  Plant Signaling & Behavior 5(9):1119-20, 2010

• In planta observation of live fluorescent plant endoparasitic nematodes during early stages of infection.
  Goto DK, Fosu-Nyarko J, Sakuma F, Sadler J, Flottman-Reid M, Uehara T, Kondo N, Yamaguchi J, Jones MGK
  Nematological Research, 40: 15-19, 2010

2009

• Regulation of leaf organ size by the Arabidopsis RPT2a 19S proteasome subunit.
  Sonoda Y, Sako K, Maki Y, Yamazaki N, Yamamoto H, Ikeda A, Yamaguchi J
  Plant J. 60: 68-78, 2009

• CNI1/ATL31, a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings.
  Sato T, Maekawa S, Yasuda S, Sonoda Y, Katoh E, Ichikawa T, Nakazawa M, Seki M, Shinozaki K, Matsui M, Goto DB, Ikeda A, Yamaguchi J
  Plant J. 60: 852-864, 2009

• DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis.
  Tsutsui T, Kato W, Asada Y, Sako K, Sato T, Sonoda Y, Kidokoro S, Yamaguchi-Shinozaki K, Tamaoki M, Arakawa K, Ichikawa T, Nakazawa M, Seki M, Shinozaki K, Matsui M, Ikeda A, Yamaguchi J
  J. Plant Res. 122: 633-643, 2009

• Arabidopsis MBF1s control Leaf Cell Cycle and its expansion.
  Tojo T, Tsuda K, Yoshizumi T, Ikeda A, Yamaguchi J, Matsui M and Yamazaki K
  Plant Cell Physiol. 50: 254-264, 2009

2008

• Promoter analysis of OsAMT1;2 and OsAMT1;3 implys their distinct roles of nitrogen utilization in rice.
  Yao S-G, Sonoda Y, Tsutsui T, Nakamura H, Ichikawa H, Ikeda A, Yamaguchi J
  Breeding Sci. 58: 201-207, 2008
• Arabidopsis CAD1 negatively controls plant immunity mediated by both salicylic acid-dependent and -independent signalling pathways.
  Tsutsui T, Asada Y, Tamaoki M, Ikeda A, Yamaguchi J
  Plant Sci.175: 604-611, 2008

2007

• SHA1, a novel RING-finger protein functions in shoot apical meristem maintenance in Arabidopsis.
  Sonoda Y, Yao S-G, Sako K, Takeo Sato, Wataru Kato, Ohto M, Ichikawa T. Matsui M, Yamaguchi J and Ikeda A
  Plant J. 50: 586-596, 2007
• alpha-Amylase production is induced by sulfuric acid in rice aleurone cells.
  Mitsunaga S, Kobayashi M, Fukui S, Fukuoka K, Kawakami O, Yamaguchi J, Ohshima M, Mitsui T
  Plant Physiol. Biochem. 45: 922-925, 2007

2006

•  Salicylic acid and a chitin elicitor both control expression of the CAD1 gene involved in plant immunity of Arabidopsis.
  Tsutsui T, Morita-Yamamuro C, Asada Y, Minami E, Shibuya N, Ikeda A, Yamaguchi J
  Biosci. Biotech. Biochem. 70: 2042-2048, 2006
• Differential expression of two fructokinases in Oryza sativa seedlings grown under aerobic and anaerobic conditions.
  Guglielminetti L, Morita A, Yamaguchi J, Loreti E, Perata P, Alpi A
  J Plant Res. 119: 351-356, 2006

2005

• The Arabidopsis gene CAD1 controls programmed cell death in the plant innate immune system and encodes a protein containing a MACPF domain.
  Morita-Yamamuro C, Tsutsui T, Sato M, Yoshioka H, Tamaoki M, Ogawa D, Matsuura H, Yoshihara T, Ikeda A, Uyeda I, Yamaguchi J
  Plant Cell Physiol., 46: 902-912, 2005
• A transposon-induced spontaneous mutation results in low b-amylase content in rice.
  Saika H, Nakazono M, Ikea A, Yamaguchi J, Masaki S, Kanekatsu M, Nemoto K
  Plant Sci. 169: 239-244, 2005
• Measurement of the concentration of bioactive gibberellin in germinating rice seed using the alpha-amylase induction from aleurone cells.
  Mitsunaga S, Kawakami O, Yamaguchi J, Mitsui T
  J. Appl. Glycosci., 52: 399-402, 2005

2004

• Low sugar status promotes endogenous ABA levels and ABA sensitivity in Arabidopsis.
  Morita-Yamamuro C, Vernieri P, Yamaguchi J
  Plant Biotechnol. 21: 9-14, 2004
• Knock-out of the plastid ribosomal protein S21 causes impaired photosynthesis and sugar-response during germination and seedling development in Arabidopsis thaliana.
  Morita-Yamamuro C, Tsutsui T, Tanaka A, Yamaguchi J
  Plant Cell Physiol. 45: 781-788, 2004
• Ammonium uptake and assimilation in rice.
  Yamaguchi J, Sonoda Y, Iwata A, Ikeda A, Tsutsui T, Morita-Yamamuro C, S.-G. Yao, Matsuhashi S, Fujimaki S, Sakamoto K, Arakawa K, Kume T
  JAERI-Review 2004-025: 122-124, 2004
• Loss-of-function mutation of rice hexokinase OsHXK1 does not affect sugar regulation of alpha-amylase RAmy3D.
  Iwata A, Ikeda A, Miyao A, Hirochika H, Yamaguchi J
  Rice Genetics Newsletter, 21: 90-92

2003

• Distinct expression and function of three ammonium transporter genes (OsAMT1;1-1;3) in rice.
  Sonoda Y, Ikeda, A, Saiki S, Von Wiren, N, Yamaya, T, Yamaguchi J
  Plant Cell Physiol. 44: 726-734, 2003
• Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice.
  Sonoda Y, Ikeda A, Saiki S, Yamaya T, Yamaguchi J
  Plant Cell Physiol. 44: 1396-1402, 2003
• Constitutive expression of a novel-type ammonium transporter OsAMT2 in rice plants.
  Suenaga A, Moriya K, Sonoda Y, Ikeda A, von Wiren N, Hayakawa T, Yamaguchi J, Yamaya T
  Plant Cell Physiol. 44: 206-211, 2003
• Sugar transporters involved in flowering and grain development of rice.
  Ngampanya B, Takeda T, Naragajavana J, Ikeda A, Yamaguchi J
  J. Appli. Glycosci. 50: 237-240, 2003
• A novel gene encoding a Ca2+-binding protein is under hexokinase-dependent sugar regulation.
  Ohtsuki S, Ikeda A, Sunako T, Muto S, Yazaki J, Nakamura K, Fujii F, Kanako S, Otsuka Y, Yamamoto K , Sakata K, Sasaki T, Kishimoto N, Kikuchi S, Yamaguchi J
  Biosci. Biotech. Biochem. 67: 347-353, 2003
• Characterization of new rice functional monosaccharide transporter, OsMST5, involved in Flower development.
  Ngampanya B, Sobolewska A, Takeda T, Toyofuku K, Naragajavana J, Ikeda A, Yamaguchi J
  Biosci. Biotech. Biochem .67: 556-562, 2003
• Sugar modulation of a-amylase genes under anoxia.
  Loret E, Yamaguchi J, Alpi A, Perata P
  Ann. Bot. 91: 143-148, 2003
• Gibberellins are not required for rice germination under anoxia.
  Loreti E, Yamaguchi J, Alpi A, Perata P
  Plant and Soil 253: 137-143, 2003
• Negative-feedback regulation of ammonium uptake and translocation in rice under ambient and elevated CO2 conditions.
  Yamaguchi J, Ohtsuki S, Sonoda Y, Yamamuro C, Ikeda A, Fujimaki S, Ishioka N, Matsuhashi S, Sekine T and Kume T
  JAERI-Review 2003-033: 126-128, 2003

2002

•  The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level.
  Ikeda A, Sonoda Y, Vernieri P, Perata P, Hirochika H, Yamaguchi J
  Plant Cell Physiol. 43: 974-979, 2002
• Characterization of OsSUT2 cDNA expressed before flowering stage of rice.
  Ngampanya B, Takeda T, Sonoda Y, Naragajavana J, Ikeda A, Yamaguchi J
  Rice Genetics Newsletter, 19: 49-52, 2002
• Positoron imaging analysis of assimilation and translocation of carbon and nitrogen sources in rice plant.
  Otsuki S, Sonoda Y, Saiki S, Ikeda A, Matsuhashi S, Watanabe S, Ishioka N.S., Sekine T, Yamaguchi J
  JAERI-Review 2002-035: 100-102, 2002

2001

• Slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8.
  Ikeda A, Ueguchi-Tanaka M, Sonoda Y, Kitano H, Koshioka M, Futsuhara Y, Matsuoka M, Yamaguchi J.
  The Plant Cell, 13: 99-110, 2001
• Sugar transporters in grain development of rice.
  Takeda T, Toyofuku K, Matsukura C, Yamaguchi J
  J. Plant Physiol. 158: 465-470, 2001
• Polymorphism in rice amylases at an early stage of seed germination.
  Mitsunaga S, Kawakami O, Numata T, Yamaguchi J, Fukui K, Mitsui T
  Biosci. Biotechnol. Biochem.65: 662-665, 2001

2000

• Transverse vein differentiation associated with the gas space formation – fate of middle cell layer in leaf sheath development of rice
  Matsukura C, Kawai M, Toyofuku K, Barrero RA, Uchimiya H and Yamaguchi J.
  Annals of Botany, 85: 19-27, 2000
• Isoform Characterization of Hexose Kinases in Rice Embryo
  Guglielminetti L, Perata P, Morita A, Loreti E, Yamaguchi J, Alpi A.
  Phytochemistry, 53: 195-200, 2000
• Glucose modulates the abscisic acid-inducible Rab16A gene in cereal embryos.
  Toyofuku K, Loreti E, Vernieri P, Alpi A, Perata P, Yamaguchi J
  Plant Mol. Biol. 42: 451-460, 2000
• Expression of alpha-amylase isoforms and the RAmy1A gene in rice (Oryza sativa L.) during seed germination , and its relationship with coleoptile length in submerged soil.
  Huang J, Toyofuku K , Yamaguchi J and Akita S.
  Plant Prod. Sci. 3: 32-37, 2000
• Distribution and characterization of enzymes responsible causing starch degradation in rice (Oryza sativa cv. Koshihikari).
  Awazuhara M, Nakagawa A, Yamaguchi J, Fujiwara T, Hayashi H, Hatae K, Chino M, Shimada A
  J. Agr. Food Chem. 48: 245-252, 2000
• Sugar represses alpha-amylase independently of GA-myb transcription.
  Loreti E, Matsukura C, Gubler F, Alpi A, Yamaguchi J, Perata P
  Plant Mol. Biol. 44: 85-90, 2000
• Sugar uptake and transport in rice embryos. Expression of companion cell-specific sucrose transporter (OsSUT1) induced by sugar as well as light.
  Matsukura C, Saitoh T, Hirose T, Ohsugi R, Perata P, Yamaguchi J
  Plant Physiol. 124: 85-94, 2000
• Characterization and expression of monosaccharide transporters (OsMSTs) in rice.
  Toyofuku K, Kasahara M, Yamaguchi J
  Plant Cell Physiol. 41: 940-947, 2000
• The expression of a gene encoding Ca2+-binding EF-hand motif is induced by sugars in rice embryos.
  Otsuki S, Matsukura C, Yamaguchi J
  Rice Genetics Newsletter 17: 92-94, 2000
• Characterization of rice ammonium transporters, OsAMT1;1 and OsAMT1;2.
  Sonoda Y, Ikeda A, Yamaguchi J
  Rice Genetics Newsletter 17: 89-92, 2000

1999

• Characterization of beta-amylase and its deficiency in various rice cultivars.
  Yamaguchi J, Itoh S, Saitoh T, Ikeda A, Tashiro T and Nagato Y
  Theor. Appl. Genet., 98: 32-38, 1999
• Reducing agent-mediated solubilization and activation of debranching enzyme (pullulanase) in rice flour.
  Takeuchi W, Masui H and Yamaguchi J
  Biosci. Biotech. Biochem., 63: 510-514, 1999
• Differences in sugar regulation between two isoforms of alpha-amylase in suspension-cultured cells of rice.
  Geshi N, Mitsui T, Akazawa T and Yamaguchi J
  J. Appl. Glycosci. 46: 111-119, 1999
• Changes in alpha-amylase isoforms during emergence of rice in submerged soil.
  Huang J, Yamaguchi J and Akita S.
  Plant Prod. Sci. 2: 12-13, 1999
• Sugar repression of alpha-amylase genes in rice embryos.
  Yamaguchi J, Toyofuku K, Morita A, Ikeda A, Matsukura C and Perata P.
  Eight International Symposium on Pre-harvest Sprouting in Cereals 1998, Ed Weipert, D., Association of Cereal Research, Detmold, pp 136-145, 1999
• Subcellular localization of rice hexose kinase, OsHXK1
  Sunako T, Morita A and Yamaguchi J.
  Rice Genetics Newsletter , 16: 120-122, 1999

1998

• Promoter elements required for sugar repression of the RAmy3D gene for alpha-amylase in rice.
  Toyofuku K, Umemura T and Yamaguchi J
  FEBS Lett., 428:275-280, 1998
• Functional dissection of a sugar-repressed alpha-amylase gene (RAmy1A) promoter in rice embryos.
  Morita A, Umemura T, Kuroyanagi M, Futsuhara Y, Perata P, Yamaguchi J
  FEBS Lett., 423: 81-85, 1998
• Sugar sensing and alpha-amylase gene repression in rice embryos
  Umemura T, Perata P, Futsuhara Y, Yamaguchi J
  Planta, 204: 420-428, 1998
• Leaf sheath growth promoted by gibberellins in dwarf mutant of rice.
  Matsukura C, Itoh S, Nemoto K, Tanimoto E, Yamaguchi J
  Planta, 205:145-152, 1998
• Temporal and spatial expression pattern of alpha-amylase gene during germination in rice and barley.
  Sugimoto N, Takeda G, Nagato Y, Yamaguchi J
  Plant Cell Physiol., 39: 323-333, 1998
• Analysis of embryo-specific alpha-amylase using isolated mature rice embryos.
  Yamaguchi J
  Breeding Sci., 48:365-370, 1998
• Detection of proteins binding to the promoter region DNA using a nonradioactive gel-retardation assay.
  Mitsunaga S, Fukui K, Ohyama H and and Yamaguchi J
  Biosci. Biotech. Biochem., 62(9):1812-1814, 1998
• Effect of anoxia on gibberellic acid-induced protease and beta-amylase processing in barley seeds.
  Loreti E, Guglielminetti L, Yamaguchi J, Gonzali S, Alpi A, Perata P.
  J. Plant Physiol., 152: 44-50, 1998
• Starch degradation during gibberellin-induced leaf sheath growth in rice.
  Matsukura C and Yamaguchi J
  Rice Genetics Newsletter, 15: 114-117, 1998
• Abscisic acid does not affect sugar-repression of rice alpha-amylase gene, RAmy3D.
  Toyofuku K and Yamaguchi J
  Rice Genetics Newsletter, 15: 173-175, 1998

1997

• Sugar repression of gibberellin-dependent signaling pathway in barley embryos.
  Perata P, Matsukura C, Vernieri P, Yamaguchi J
  Plant Cell, 9: 2197-2208, 1997
• Effects of anoxia on sucrose degrading enzymes in cereal seeds.
  Guglielminetti L, Wu J, Boschi E, Yamaguchi J, Favati A, Vergara MR, Perata P, Alpi A
  J. Plant Physiol., 150: 251-258, 1997
• Characterization and expression of GASR1, a root-specific GAST1-like protein in rice.
  Ikeda A, Yamaguchi J, Futsuhara
  Rice Genet. Newslett., 14: 150-153, 1997
• Temporal and spatial expression pattern of rice alpha-amylase gene RAmy1A during seed development.
  Sugimoto N, Takeda G, Nagato Y, Yamaguchi J
  Rice Genet. Newslett., 14: 148-150, 1997
• The first leaf sheath growth promoted by gibberellins in dwarf mutant of rice.
  Matsukura C, Yamaguchi J
  Rice Genet. Newslett., 14: 153-155, 1997

1996

• Expression of RAmy3D-protein (isoform H) in rice seedlings. In K. Noda and Mares, D.J., eds,
  Yamaguchi J, Geshi N, Mitsunaga S, Itoh S, Umemura T, Masui H, Mitsui T
  Seventh International Symposium on Pre-harvest Sprouting in Cereals 1995, Center for Academic Societies Japan, Osaka, 405-410, 1996
• Physicochemical and serological characterization of rice alpha-amylase isoforms and identification of their corresponding genes.
  Mitsui T, Yamaguchi J, Akazawa T
  Plant Physiol., 110: 1395-1404, 1996
• Changes in alpha-amylase activity during plant regeneration from rice calli.
  Abe T, Kudo M, Oka Y, Yamaguchi J, Sasahara T
  J. Plant Physiol., 149: 592-598, 1996
• The same nuclear proteins bind to the 5′-flanking regions of the rice seed storage protein, 16 kDa albumin, 13 kDa prolamin and type II glutelin genes.
  Nakase M, Yamada T, Kira T, Yamaguchi J, Aoki N, Nakamura R, Matsuda T, Adachi T
  Plant Mol. Biol., 32: 621-630, 1996

1995-1992

• Developmental and Hormonal Regulation of Rice alpha-Amylase (RAmy1A)-gusA Fusion Genes in Transgenic Rice Seeds.
  Itoh K, Yamaguchi J, Huang N, Rodriguez RL, Akazawa T, Shimamoto　K
  Plant Physiol., 107: 25-31, 1995
• Amylolytic Activities in Cereal Seeds under Aerobic and Anaerobic Conditions.
  Guglielminetti L, Yamaguchi J, Perata P, Alpi A
  Plant Physiol., 109: 1069-1076, 1995
• Sequence-specific interactions of a nulear protein factor with the promoter region of a rice gene for alpha-amylase, RAmy3D.
  Mitsunaga S, Rodriguez RL, Yamaguchi J
  Nucleic Acids Res., 22: 1948-1953, 1994
• Identification and characterization of gibberellin-insensitive mutants selected from among dwarf mutants of rice.
  Mitsunaga S, Tashiro T, Yamaguchi J
  Theor. Appl. Genet., 87: 705-712, 1994
• Induction of alpha-Amylase is Repressed by Uniconazole, an Inhibitor of the Biosynthesis of Gibberellin, in a Dwarf Mutant of Rice, Waito-C.
  Mitsunaga S, Yamaguchi J
  Plant Cell Physiol., 34: 243-249, 1993
• Effect of anoxia on the induction of alpha-amylase in cereal seeds.
  Perata P, Geshi N, Yamaguchi J, Akazawa T
  Planta, 191: 402-408, 1993
• Effect of anoxia on starch breakdown in rice and wheat seeds.
  Perata P, Pozueta-Romero J, Akazawa T, Yamaguchi J
  Planta, 188: 611-618, 1992